Browsing by Subject "Begomovirus"

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    Begomovirus causing leaf curl disease in tomato (Lycopersicon esculentum L.) in sub-Himalayan West Bengal, India
    (University of North Bengal, 2013-03) Saha, B.; Saha, D.; Saha, A.
    Tomato (Lycopersicon esculentum L.) is an extensively cultivated vegetable crop in India. In the year 2009, a survey was conducted to find leaf curls of tomato in different locations of sub-Himalayan West Bengal, India. During the survey a severe leaf curl disease was observed. The characteristic disease symptoms (puckered leaves) and presence of whitefly (Bemisia tabaci) population indicated the possibility of begomovirus infection. Total DNA was extracted from the infected samples and PCR was carried out using begomovirus specific primers. An amplicon of expected size ( ̴1280 bp) was found when PALIc1960 and PARIv722 were used as primers in agarose gel electrophoresis. The PCR Amplicons of two samples (collected from two different places of present study area) were cloned and sequenced (GenBank accession nos. HM856626 and HM856627). The sequence data analysis of partial coat protein gene (AV1), full replication enhancer protein gene (AC3) and partial transcription activator protein gene (AC2) of 831 nt revealed highest 98% similarities with several isolates of Tobacco curly shoot virus (TBCSV) at both nucleotide and amino acid levels. The phylogenetic analysis also showed close relationship of the present isolates with different variants of TbCSV. Based on highest sequence similarities and closest relationships with TbCSV the viruses (present in infected tomato plants) were considered as Begomovirus. Transmission of the virus in tomato could not be done by sap transmission procedure. In experimental insect transmission tests, test plants showed symptoms very much like the natural symptoms. Artificial transmission was confirmed by comparing the PCR Amplicons raised from the experimentally infected plants.
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    Prevalence of begomoviruses associated with tomato leaf curl disease in the sub-Himalayan plains of West Bengal
    (University of North Bengal, 2016-03) Karmakar, A.; Chakraborty, P.; Sarkar, T.; Das, S.; Saha, A.; Saha, D.; Saha, A.
    Tomato is a solanaceous crop and one of the most economically important vegetables in the world. India ranks second in total production of tomato in the world. It has been referred to as a “functional food”, a food that goes beyond providing just basic nutrient. To LCD is one of the major constraints to tomato production in India. To study the disease incidence of tomato, a survey was made in the tomato crop growing fields of Darjeeling, Jalpaiguri, Coochbehar and Uttar Dinajpur districts of sub-Himalayan West Bengal during December 2015 to February 2016 and several infected and healthy leaf samples were collected based on the morphological symptoms like-vein cleaning, leaf curling, leaf deformations and stunted growth of plants. Disease incidence ranged from 70% to 86.66% of the collected samples from different districts. All the samples collected from the present study area were tested by PCR with DengA and DengB primer and expected amplicon of ̴ 530bp was found. Two randomly selected PCR positive samples were sequence and analyzed (Acc. Nos KX108859 and KX108860). The SLG-1 isolate (Acc. No. KX108859) showed 95 % nt identity with ToLCKV (Acc. No. KP178730) and the ISL-1 isolate (Acc. No. KX108860) showed 96% nt identity with ToLCNDV (Acc. No. KC513822). The threat of begomoviral spread to the north-eastern part of India has been taken into consideration.